bc.f90

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module bc
  use neko_config, only : neko_bcknd_device
  use num_types, only : rp
  use device, only : device_get_ptr, host_to_device, device_memcpy, &
       device_free, device_map, device_to_host
  use iso_c_binding, only: c_associated
  use dofmap, only : dofmap_t
  use coefs, only : coef_t
  use space, only : space_t
  use mesh, only : mesh_t, neko_msh_max_zlbls, neko_msh_max_zlbl_len
  use facet_zone, only : facet_zone_t
  use stack, only : stack_i4t2_t
  use tuple, only : tuple_i4_t
  use field, only : field_t
  use gather_scatter
  use math, only : relcmp
  use utils, only : neko_error, linear_index, split_string
  use, intrinsic :: iso_c_binding, only : c_ptr, c_null_ptr
  use json_module, only : json_file
  implicit none
  private
 
  type, public, abstract :: bc_t
     integer, allocatable :: msk(:)
     integer, allocatable :: facet(:)
     type(dofmap_t), pointer :: dof => null()
     type(coef_t), pointer :: coef => null()
     type(mesh_t), pointer :: msh => null()
     type(space_t), pointer :: xh => null()
     type(stack_i4t2_t) :: marked_facet
     type(c_ptr) :: msk_d = c_null_ptr
     type(c_ptr) :: facet_d = c_null_ptr
     logical :: strong = .true.
   contains
     procedure, pass(this) :: init_base => bc_init_base
     procedure, pass(this) :: free_base => bc_free_base
     procedure, pass(this) :: mark_facet => bc_mark_facet
     procedure, pass(this) :: mark_facets => bc_mark_facets
     procedure, pass(this) :: mark_zone => bc_mark_zone
     procedure, pass(this) :: finalize_base => bc_finalize_base
 
     procedure, pass(this) :: apply_scalar_generic => bc_apply_scalar_generic
     procedure, pass(this) :: apply_vector_generic => bc_apply_vector_generic
     procedure, pass(this) :: debug_mask_ => bc_debug_mask
     procedure(bc_apply_scalar), pass(this), deferred :: apply_scalar
     procedure(bc_apply_vector), pass(this), deferred :: apply_vector
     procedure(bc_apply_scalar_dev), pass(this), deferred :: apply_scalar_dev
     procedure(bc_apply_vector_dev), pass(this), deferred :: apply_vector_dev
     procedure(bc_destructor), pass(this), deferred :: free
     procedure(bc_constructor), pass(this), deferred :: init
     procedure(bc_finalize), pass(this), deferred :: finalize
  end type bc_t
  type, public, abstract :: bc_t …
 
  type, public :: bc_ptr_t
     class(bc_t), pointer :: ptr => null()
  end type bc_ptr_t
  type, public :: bc_ptr_t …
 
  ! Helper type to have an array of polymorphic bc_t objects.
  type, public :: bc_alloc_t
     class(bc_t), allocatable :: obj
  end type bc_alloc_t
  type, public :: bc_alloc_t …
 
 
  abstract interface
 
     subroutine bc_constructor(this, coef, json)
       import :: bc_t, coef_t, json_file
       class(bc_t), intent(inout), target :: this
       type(coef_t), intent(in) :: coef
       type(json_file), intent(inout) :: json
     subroutine bc_constructor(this, coef, json) …
     end subroutine bc_constructor
  end interface
 
  abstract interface
 
     subroutine bc_destructor(this)
       import :: bc_t
       class(bc_t), intent(inout), target :: this
     subroutine bc_destructor(this) …
     end subroutine bc_destructor
  end interface
 
  abstract interface
 
     subroutine bc_finalize(this)
       import :: bc_t
       class(bc_t), intent(inout), target :: this
     subroutine bc_finalize(this) …
     end subroutine bc_finalize
  end interface
 
  abstract interface
 
     subroutine bc_apply_scalar(this, x, n, t, tstep, strong)
       import :: bc_t
       import :: rp
       class(bc_t), intent(inout) :: this
       integer, intent(in) :: n
       real(kind=rp), intent(inout), dimension(n) :: x
       real(kind=rp), intent(in), optional :: t
       integer, intent(in), optional :: tstep
       logical, intent(in), optional :: strong
     subroutine bc_apply_scalar(this, x, n, t, tstep, strong) …
     end subroutine bc_apply_scalar
  end interface
 
  abstract interface
 
     subroutine bc_apply_vector(this, x, y, z, n, t, tstep, strong)
       import :: bc_t
       import :: rp
       class(bc_t), intent(inout) :: this
       integer, intent(in) :: n
       real(kind=rp), intent(inout), dimension(n) :: x
       real(kind=rp), intent(inout), dimension(n) :: y
       real(kind=rp), intent(inout), dimension(n) :: z
       real(kind=rp), intent(in), optional :: t
       integer, intent(in), optional :: tstep
       logical, intent(in), optional :: strong
     subroutine bc_apply_vector(this, x, y, z, n, t, tstep, strong) …
     end subroutine bc_apply_vector
  end interface
 
  abstract interface
 
     subroutine bc_apply_scalar_dev(this, x_d, t, tstep, strong)
       import :: c_ptr
       import :: bc_t
       import :: rp
       class(bc_t), intent(inout), target :: this
       type(c_ptr) :: x_d
       real(kind=rp), intent(in), optional :: t
       integer, intent(in), optional :: tstep
       logical, intent(in), optional :: strong
     subroutine bc_apply_scalar_dev(this, x_d, t, tstep, strong) …
     end subroutine bc_apply_scalar_dev
  end interface
 
  abstract interface
 
     subroutine bc_apply_vector_dev(this, x_d, y_d, z_d, t, tstep, strong)
       import :: c_ptr
       import :: bc_t
       import :: rp
       class(bc_t), intent(inout), target :: this
       type(c_ptr) :: x_d
       type(c_ptr) :: y_d
       type(c_ptr) :: z_d
       real(kind=rp), intent(in), optional :: t
       integer, intent(in), optional :: tstep
       logical, intent(in), optional :: strong
     subroutine bc_apply_vector_dev(this, x_d, y_d, z_d, t, tstep, strong) …
     end subroutine bc_apply_vector_dev
  end interface
 
contains
 
  subroutine bc_init_base(this, coef)
    class(bc_t), intent(inout) :: this
    type(coef_t), target, intent(in) :: coef
 
    call this%free_base
 
    this%dof => coef%dof
    this%coef => coef
    this%Xh => this%dof%Xh
    this%msh => this%dof%msh
 
    call this%marked_facet%init()
 
  subroutine bc_init_base(this, coef) …
  end subroutine bc_init_base
 
  subroutine bc_free_base(this)
    class(bc_t), intent(inout) :: this
 
    call this%marked_facet%free()
 
    nullify(this%Xh)
    nullify(this%msh)
    nullify(this%dof)
    nullify(this%coef)
 
    if (allocated(this%msk)) then
       deallocate(this%msk)
    end if
 
    if (allocated(this%facet)) then
       deallocate(this%facet)
    end if
 
    if (c_associated(this%msk_d)) then
       call device_free(this%msk_d)
       this%msk_d = c_null_ptr
    end if
 
    if (c_associated(this%facet_d)) then
       call device_free(this%facet_d)
       this%facet_d = c_null_ptr
    end if
 
  subroutine bc_free_base(this) …
  end subroutine bc_free_base
 
  subroutine bc_apply_vector_generic(this, x, y, z, n, t, tstep)
    class(bc_t), intent(inout) :: this
    integer, intent(in) :: n
    real(kind=rp), intent(inout), dimension(n) :: x
    real(kind=rp), intent(inout), dimension(n) :: y
    real(kind=rp), intent(inout), dimension(n) :: z
    real(kind=rp), intent(in), optional :: t
    integer, intent(in), optional :: tstep
    type(c_ptr) :: x_d
    type(c_ptr) :: y_d
    type(c_ptr) :: z_d
    integer :: i
 
 
    if (neko_bcknd_device .eq. 1) then
       x_d = device_get_ptr(x)
       y_d = device_get_ptr(y)
       z_d = device_get_ptr(z)
       if (present(t) .and. present(tstep)) then
          call this%apply_vector_dev(x_d, y_d, z_d, t = t, tstep = tstep)
       else if (present(t)) then
          call this%apply_vector_dev(x_d, y_d, z_d, t = t)
       else if (present(tstep)) then
          call this%apply_vector_dev(x_d, y_d, z_d, tstep = tstep)
       else
          call this%apply_vector_dev(x_d, y_d, z_d)
       end if
    else
       if (present(t) .and. present(tstep)) then
          call this%apply_vector(x, y, z, n, t = t, tstep = tstep)
       else if (present(t)) then
          call this%apply_vector(x, y, z, n, t = t)
       else if (present(tstep)) then
          call this%apply_vector(x, y, z, n, tstep = tstep)
       else
          call this%apply_vector(x, y, z, n)
       end if
    end if
 
  subroutine bc_apply_vector_generic(this, x, y, z, n, t, tstep) …
  end subroutine bc_apply_vector_generic
 
  subroutine bc_apply_scalar_generic(this, x, n, t, tstep)
    class(bc_t), intent(inout) :: this
    integer, intent(in) :: n
    real(kind=rp), intent(inout), dimension(n) :: x
    real(kind=rp), intent(in), optional :: t
    integer, intent(in), optional :: tstep
    type(c_ptr) :: x_d
    integer :: i
 
 
    if (neko_bcknd_device .eq. 1) then
       x_d = device_get_ptr(x)
       if (present(t) .and. present(tstep)) then
          call this%apply_scalar_dev(x_d, t = t, tstep = tstep)
       else if (present(t)) then
          call this%apply_scalar_dev(x_d, t = t)
       else if (present(tstep)) then
          call this%apply_scalar_dev(x_d, tstep = tstep)
       else
          call this%apply_scalar_dev(x_d)
       end if
    else
       if (present(t) .and. present(tstep)) then
          call this%apply_scalar(x, n, t = t, tstep = tstep)
       else if (present(t)) then
          call this%apply_scalar(x, n, t = t)
       else if (present(tstep)) then
          call this%apply_scalar(x, n, tstep = tstep)
       else
          call this%apply_scalar(x, n)
       end if
    end if
 
  subroutine bc_apply_scalar_generic(this, x, n, t, tstep) …
  end subroutine bc_apply_scalar_generic
 
  subroutine bc_mark_facet(this, facet, el)
    class(bc_t), intent(inout) :: this
    integer, intent(in) :: facet
    integer, intent(in) :: el
    type(tuple_i4_t) :: t
 
    t%x = [facet, el]
    call this%marked_facet%push(t)
 
  subroutine bc_mark_facet(this, facet, el) …
  end subroutine bc_mark_facet
 
  subroutine bc_mark_facets(this, facet_list)
    class(bc_t), intent(inout) :: this
    type(stack_i4t2_t), intent(inout) :: facet_list
    type(tuple_i4_t), pointer :: fp(:)
    integer :: i
 
    fp => facet_list%array()
    do i = 1, facet_list%size()
       call this%marked_facet%push(fp(i))
    end do
 
  subroutine bc_mark_facets(this, facet_list) …
  end subroutine bc_mark_facets
 
  subroutine bc_mark_zone(this, bc_zone)
    class(bc_t), intent(inout) :: this
    class(facet_zone_t), intent(in) :: bc_zone
    integer :: i
    do i = 1, bc_zone%size
       call this%marked_facet%push(bc_zone%facet_el(i))
    end do
  subroutine bc_mark_zone(this, bc_zone) …
  end subroutine bc_mark_zone
 
  subroutine bc_finalize_base(this, only_facets)
    class(bc_t), target, intent(inout) :: this
    logical, optional, intent(in) :: only_facets
    type(tuple_i4_t), pointer :: bfp(:)
    type(tuple_i4_t) :: bc_facet
    type(field_t) :: test_field
    integer :: facet_size, facet, el
    logical :: only_facet = .false.
    integer :: i, j, k, l, msk_c
    integer :: lx, ly, lz, n
    lx = this%Xh%lx
    ly = this%Xh%ly
    lz = this%Xh%lz
    if ( present(only_facets)) then
       only_facet = only_facets
    else
       only_facet = .false.
    end if
 
    ! Note we assume that lx = ly = lz
    facet_size = lx**2
    allocate(this%msk(0:facet_size * this%marked_facet%size()))
    allocate(this%facet(0:facet_size * this%marked_facet%size()))
 
    msk_c = 0
    bfp => this%marked_facet%array()
 
    ! Loop through each (facet, element) id tuple
    ! Then loop over all the nodes of the face and compute their linear index
    ! This index goes into this%msk, whereas the corresponding face id goes into
    ! this%facet
    do i = 1, this%marked_facet%size()
       bc_facet = bfp(i)
       facet = bc_facet%x(1)
       el = bc_facet%x(2)
       select case (facet)
       case (1)
          do l = 1, lz
             do k = 1, ly
                msk_c = msk_c + 1
                this%msk(msk_c) = linear_index(1, k, l, el, lx, ly, lz)
                this%facet(msk_c) = 1
             end do
          end do
       case (2)
          do l = 1, lz
             do k = 1, ly
                msk_c = msk_c + 1
                this%msk(msk_c) = linear_index(lx, k, l, el, lx, ly, lz)
                this%facet(msk_c) = 2
             end do
          end do
       case (3)
          do l = 1, lz
             do j = 1, lx
                msk_c = msk_c + 1
                this%msk(msk_c) = linear_index(j, 1, l, el, lx, ly, lz)
                this%facet(msk_c) = 3
             end do
          end do
       case (4)
          do l = 1, lz
             do j = 1, lx
                msk_c = msk_c + 1
                this%msk(msk_c) = linear_index(j, ly, l, el, lx, ly, lz)
                this%facet(msk_c) = 4
             end do
          end do
       case (5)
          do k = 1, ly
             do j = 1, lx
                msk_c = msk_c + 1
                this%msk(msk_c) = linear_index(j, k, 1, el, lx, ly, lz)
                this%facet(msk_c) = 5
             end do
          end do
       case (6)
          do k = 1, ly
             do j = 1, lx
                msk_c = msk_c + 1
                this%msk(msk_c) = linear_index(j, k, lz, el, lx, ly, lz)
                this%facet(msk_c) = 6
             end do
          end do
       end select
    end do
    if ( .not. only_facet) then
       !Makes check for points not on facet that should have bc applied
       call test_field%init(this%dof)
 
       n = test_field%size()
       test_field%x = 0.0_rp
       !Apply this bc once
       do i = 1, msk_c
          test_field%x(this%msk(i),1,1,1) = 1.0
       end do
       if (neko_bcknd_device .eq. 1) then
          call device_memcpy(test_field%x, test_field%x_d, n, &
               host_to_device, sync=.true.)
       end if
       !Check if some point that was not zeroed was zeroed on another element
       call this%coef%gs_h%op(test_field,gs_op_add)
       if (neko_bcknd_device .eq. 1) then
          call device_memcpy(test_field%x, test_field%x_d, n, &
               device_to_host, sync=.true.)
       end if
       msk_c = 0
       do i = 1, this%dof%size()
          if (test_field%x(i,1,1,1) .gt. 0.5) then
             msk_c = msk_c + 1
          end if
       end do
       !Allocate new mask
       deallocate(this%msk)
       allocate(this%msk(0:msk_c))
       j = 1
       do i = 1, this%dof%size()
          if (test_field%x(i,1,1,1) .gt. 0.5) then
             this%msk(j) = i
             j = j + 1
          end if
       end do
 
       call test_field%free()
    end if
 
    this%msk(0) = msk_c
    this%facet(0) = msk_c
 
    if (neko_bcknd_device .eq. 1) then
       n = msk_c + 1
       call device_map(this%msk, this%msk_d, n)
       call device_map(this%facet, this%facet_d, n)
 
       call device_memcpy(this%msk, this%msk_d, n, &
            host_to_device, sync = .false.)
       call device_memcpy(this%facet, this%facet_d, n, &
            host_to_device, sync = .true.)
    end if
 
  subroutine bc_finalize_base(this, only_facets) …
  end subroutine bc_finalize_base
 
  subroutine bc_debug_mask(this, file_name)
    use field, only : field_t
    use file, only : file_t
 
    class(bc_t), intent(inout) :: this
    character(len=*), intent(in) :: file_name
    type(field_t) :: bdry_field
    integer:: i, m, k
    type(file_t) :: dump_file
 
    call bdry_field%init(this%coef%dof, 'bdry')
    m = this%msk(0)
    do i = 1, m
       k = this%msk(i)
       bdry_field%x(k,1,1,1) = 1.0_rp
    end do
    dump_file = file_t(file_name)
    call dump_file%write(bdry_field)
 
  subroutine bc_debug_mask(this, file_name) …
  end subroutine bc_debug_mask
end module bc